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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0508090 |
| Transcript ID | Lj5g3v0508090.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | 60S ribosomal protein L7 [Medicago truncatula] gi|357444611|ref|XP_003592583.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 167 | 167 | 1.60E-80 | – | |
| PANTHER | 1 | 167 | 167 | 1.60E-80 | – | |
| SUPERFAMILY | 10 | 113 | 104 | 3.73E-20 | ||
| Gene3D | 12 | 106 | 95 | 7.70E-21 | ||
| CDD | 13 | 104 | 92 | 2.54E-14 | ||
| ProSiteProfiles | 13 | 106 | 94 | 13.028 | ||
| Pfam | 14 | 105 | 92 | 9.00E-15 | ||
| SMART | 14 | 106 | 93 | 7.00E-10 | ||
| MobiDBLite | 144 | 171 | 28 | – | – | |
| Gene3D | 211 | 305 | 95 | 3.90E-18 | ||
| SUPERFAMILY | 212 | 305 | 94 | 3.53E-17 | ||
| PANTHER | 213 | 449 | 237 | 1.60E-80 | – | |
| PANTHER | 213 | 449 | 237 | 1.60E-80 | – | |
| CDD | 217 | 306 | 90 | 5.04E-16 | ||
| ProSiteProfiles | 218 | 306 | 89 | 11.335 | ||
| SMART | 219 | 308 | 90 | 7.30E-14 | ||
| Pfam | 219 | 305 | 87 | 6.40E-14 | ||
| Gene3D | 345 | 449 | 105 | 2.30E-17 | ||
| SUPERFAMILY | 346 | 449 | 104 | 1.45E-15 | ||
| SMART | 352 | 451 | 100 | 2.80E-05 | ||
| Pfam | 352 | 449 | 98 | 7.90E-12 | ||
| CDD | 352 | 449 | 98 | 2.01E-14 | ||
| ProSiteProfiles | 352 | 451 | 100 | 9.827 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj5g3v0508090.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0508090.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.