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Lj5g3v0658230.1

Overview

Field Value
Gene ID Lj5g3v0658230
Transcript ID Lj5g3v0658230.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein 39-like [Glycine max] gi|356536386|ref|XP_003536719.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-noTM_EUK
1 34 34 – –
Pfam
PF15519
56 86 31 5.40E-07
IPR029123
SUPERFAMILY
SSF54928
65 149 85 2.61E-17
IPR012677
CDD
cd12285
68 149 82 5.86E-40 –
ProSiteProfiles
PS50102
69 149 81 8.706
IPR000504
Gene3D
G3DSA:3.30.70.330
69 149 81 1.10E-19
IPR012677
SMART
SM00360
70 148 79 0.0024
IPR000504
PANTHER
PTHR15608
73 149 77 2.80E-13 –
Pfam
PF00076
92 145 54 9.60E-05
IPR000504

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v0658230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0658230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.