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IPR029123 is a Splicing factor RBM39, linker.
<p>This entry represents a conserved linker between the second and the third RRM domain in human RBM39 (also known as CAPER) protein and other RNA splicing proteins. CAPER is a transcriptional coactivator of activating protein-1 (AP-1) and estrogen receptors (ERs). This linker was implicated in interactions with ERalpha and ERbeta [[cite:PUB00017722]]. Preliminary results from JCSG suggest that this is a structured domain with a well defined fold.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: RNA-binding protein 39-like [Glycine max] gi|356536386|ref|XP_003536719.1| | 17 | ||
– | PREDICTED: RNA-binding protein 39-like isoform X2 [Cicer arietinum] gi|502136894|ref|XP_004502884.1| | 20 | ||
– | PREDICTED: RNA-binding protein 39-like [Cicer arietinum] gi|502139943|ref|XP_004503982.1| | 18 | ||
– | PREDICTED: RNA-binding protein 39-like isoform X2 [Cicer arietinum] gi|502136894|ref|XP_004502884.1| | 18 | ||
– | RNA-binding protein [Medicago truncatula] gi|357519763|ref|XP_003630170.1| | 17 | ||
– | RNA-binding protein [Medicago truncatula] gi|357519763|ref|XP_003630170.1| | 13 | ||
– | PREDICTED: RNA-binding protein 39-like [Glycine max] gi|356536386|ref|XP_003536719.1| | 12 | ||
– | RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500 | 19 | ||
– | RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500 | 19 | ||
– | RNA-binding protein 39; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q14498|RBM39_HUMAN RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi4g1v0406100 | 19 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 10.00 |