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Lj5g3v0658330.1

Overview

Field Value
Gene ID Lj5g3v0658330
Transcript ID Lj5g3v0658330.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: intron-binding protein aquarius-like [Glycine max] gi|356574068|ref|XP_003555174.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10887:SF5
1 1097 1097 0
IPR032464
PANTHER
PTHR10887
1 1097 1097 0 –
Pfam
PF16399
2 477 476 5.60E-192
IPR032174
Gene3D
G3DSA:3.40.50.300
458 591 134 2.10E-31
IPR027417
SUPERFAMILY
SSF52540
470 545 76 8.62E-53
IPR027417
Pfam
PF13086
481 778 298 7.80E-29 –
CDD
cd00046
494 590 97 0.00242891 –
SUPERFAMILY
SSF52540
673 976 304 8.62E-53
IPR027417
Gene3D
G3DSA:3.40.50.300
727 825 99 2.10E-31
IPR027417
Pfam
PF13087
787 978 192 1.20E-24 –
Gene3D
G3DSA:3.40.50.300
919 988 70 4.40E-05
IPR027417
MobiDBLite
mobidb-lite
1079 1128 50 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj5g3v0658330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0658330.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.