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Lj5g3v0747050.1

Overview

Field Value
Gene ID Lj5g3v0747050
Transcript ID Lj5g3v0747050.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box protein At3g58530-like [Glycine max] gi|356530677|ref|XP_003533907.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006:SF440
2 352 351 1.50E-196 –
PANTHER
PTHR24006
2 352 351 1.50E-196 –
Gene3D
G3DSA:3.80.10.10
34 287 254 9.80E-45
IPR032675
SUPERFAMILY
SSF52047
80 348 269 3.34E-43 –
SMART
SM00367
114 139 26 0.029
IPR006553
Pfam
PF13516
115 136 22 0.0014
IPR001611
SMART
SM00367
140 165 26 0.025
IPR006553
Pfam
PF13516
165 186 22 0.044
IPR001611
SMART
SM00367
166 191 26 0.0065
IPR006553
SMART
SM00367
192 217 26 11
IPR006553
SMART
SM00367
218 243 26 23
IPR006553
SMART
SM00367
268 293 26 2.60E-06
IPR006553
Pfam
PF13516
268 291 24 0.0081
IPR001611
SMART
SM00367
294 319 26 42
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 77

Expression data

Expression pattern

Expression pattern of Lj5g3v0747050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0747050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.