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Lj5g3v0875570.1

Overview

Field	Value
Gene ID	Lj5g3v0875570
Transcript ID	Lj5g3v0875570.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Cicer arietinum] gi\|502179096\|ref\|XP_004516372.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	108	108	–	–
PANTHER	PTHR10183 View details on PTHR10183 Search for proteins/transripts with this domain View external data on PTHR10183	54	83	30	1.80E-95	–
PANTHER	PTHR10183 View details on PTHR10183 Search for proteins/transripts with this domain View external data on PTHR10183	102	296	195	1.80E-95	–
SUPERFAMILY	SSF47473 View details on SSF47473 Search for proteins/transripts with this domain View external data on SSF47473	122	291	170	2.29E-37	IPR011992 Show description in modal box View details on IPR011992 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50222 View details on PS50222 Search for proteins/transripts with this domain View external data on PS50222	125	160	36	10.301	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00054 View details on SM00054 Search for proteins/transripts with this domain View external data on SM00054	129	157	29	0.091	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.10.238.10 View details on G3DSA:1.10.238.10 Search for proteins/transripts with this domain View external data on G3DSA:1.10.238.10	130	290	161	2.30E-38	IPR011992 Show description in modal box View details on IPR011992 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13202 View details on PF13202 Search for proteins/transripts with this domain View external data on PF13202	130	152	23	1.70E-04	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00051 View details on cd00051 Search for proteins/transripts with this domain View external data on cd00051	132	220	89	1.97E-06	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00018 View details on PS00018 Search for proteins/transripts with this domain View external data on PS00018	138	150	13	–	IPR018247 Show description in modal box View details on IPR018247 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50222 View details on PS50222 Search for proteins/transripts with this domain View external data on PS50222	191	226	36	14.179	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00054 View details on SM00054 Search for proteins/transripts with this domain View external data on SM00054	195	223	29	0.0025	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00036 View details on PF00036 Search for proteins/transripts with this domain View external data on PF00036	197	221	25	1.70E-06	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00051 View details on cd00051 Search for proteins/transripts with this domain View external data on cd00051	197	256	60	3.35E-08	IPR002048 Show description in modal box View details on IPR002048 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00018 View details on PS00018 Search for proteins/transripts with this domain View external data on PS00018	204	216	13	–	IPR018247 Show description in modal box View details on IPR018247 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005509 View details of GO:0005509 AmiGO InterPro QuickGO	Molecular function	Calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).	Subterm of View details of GO:0046872

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj5g3v0875570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0875570.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.