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Lj5g3v1004040.1

Overview

Field Value
Gene ID Lj5g3v1004040
Transcript ID Lj5g3v1004040.1
Lotus japonicus genome version MG20 v3.0
Description Uncharacterized protein TCM_023639 [Theobroma cacao] gi|508716765|gb|EOY08662.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
50 101 52 – –
SUPERFAMILY
SSF57756
133 163 31 2.62E-07
IPR001878
Pfam
PF00098
139 155 17 1.50E-06
IPR001878
SMART
SM00343
139 155 17 1.20E-04
IPR001878
ProSiteProfiles
PS50158
140 155 16 11.136
IPR001878
Gene3D
G3DSA:4.10.60.10
140 159 20 2.00E-05
IPR001878

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1004040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1004040.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.