Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1095000.1

Overview

Field Value
Gene ID Lj5g3v1095000
Transcript ID Lj5g3v1095000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable methyltransferase PMT1-like [Glycine max] gi|356536844|ref|XP_003536943.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 11 11 – –
Phobius
TRANSMEMBRANE
12 31 20 – –
TMHMM
TMhelix
13 32 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
32 595 564 – –
PANTHER
PTHR10108
55 303 249 1.60E-270 –
PANTHER
PTHR10108:SF906
55 303 249 1.60E-270 –
Pfam
PF03141
70 581 512 5.80E-223
IPR004159
SUPERFAMILY
SSF53335
108 327 220 5.36E-24
IPR029063
Gene3D
G3DSA:3.40.50.150
194 313 120 8.40E-16
IPR029063
SUPERFAMILY
SSF53335
379 539 161 2.27E-10
IPR029063
PANTHER
PTHR10108:SF906
469 567 99 1.60E-270 –
PANTHER
PTHR10108
469 567 99 1.60E-270 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

LORE1 insertions 30

Expression data

Expression pattern

Expression pattern of Lj5g3v1095000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1095000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.