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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1174300 |
| Transcript ID | Lj5g3v1174300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA repair protein XRCC4-like [Cicer arietinum] gi|502116233|ref|XP_004495346.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 256 | 256 | 9.90E-105 | – | |
| Gene3D | 17 | 86 | 70 | 8.70E-06 | ||
| SUPERFAMILY | 27 | 102 | 76 | 9.29E-05 | ||
| Pfam | 29 | 242 | 214 | 2.60E-21 | ||
| SUPERFAMILY | 119 | 207 | 89 | 6.15E-24 | – | |
| Gene3D | 121 | 210 | 90 | 9.50E-21 | ||
| Coils | 183 | 203 | 21 | – | – | |
| MobiDBLite | 194 | 260 | 67 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Double-strand break repair | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of Lj5g3v1174300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1174300.1, powered by CORGI.
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