Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1301190.1

Overview

Field Value
Gene ID Lj5g3v1301190
Transcript ID Lj5g3v1301190.1
Lotus japonicus genome version MG20 v3.0
Description F-box protein PP2-B1 [Medicago truncatula] gi|358348676|ref|XP_003638370.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32278:SF6
1 264 264 3.00E-108 –
PANTHER
PTHR32278
1 264 264 3.00E-108 –
ProSiteProfiles
PS50181
1 44 44 10.822
IPR001810
SUPERFAMILY
SSF81383
2 99 98 2.35E-14
IPR001810
Gene3D
G3DSA:1.20.1280.50
3 66 64 1.20E-08 –
Pfam
PF00646
4 44 41 1.90E-07
IPR001810
SMART
SM00256
4 44 41 6.70E-05
IPR001810
Pfam
PF14299
94 262 169 4.10E-42
IPR025886

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1301190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1301190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.