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Lj5g3v1452280.1

Overview

Field Value
Gene ID Lj5g3v1452280
Transcript ID Lj5g3v1452280.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription factor bHLH96-like [Glycine max] gi|356576765|ref|XP_003556500.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 41 41 – –
PANTHER
PTHR11969
10 242 233 3.30E-154 –
PANTHER
PTHR11969:SF26
10 242 233 3.30E-154 –
CDD
cd00083
40 97 58 4.16E-13 –
Gene3D
G3DSA:4.10.280.10
40 97 58 3.30E-14
IPR011598
ProSiteProfiles
PS50888
41 92 52 15.421
IPR011598
SUPERFAMILY
SSF47459
41 105 65 3.93E-16
IPR011598
Pfam
PF00010
42 93 52 3.80E-10
IPR011598
SMART
SM00353
47 98 52 1.30E-09
IPR011598

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v1452280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1452280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.