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Lj5g3v1452310.1

Overview

Field Value
Gene ID Lj5g3v1452310
Transcript ID Lj5g3v1452310.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: B3 domain-containing protein Os11g0197600-like [Vitis vinifera] gi|359475406|ref|XP_003631680.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
77 115 39 – –
SUPERFAMILY
SSF101936
123 221 99 2.55E-16
IPR015300
Gene3D
G3DSA:2.40.330.10
123 222 100 3.90E-15
IPR015300
ProSiteProfiles
PS50863
124 224 101 12.041
IPR003340
SMART
SM01019
124 224 101 2.70E-09
IPR003340
CDD
cd10017
124 222 99 5.62E-12
IPR003340
Pfam
PF02362
124 223 100 8.40E-13
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v1452310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1452310.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.