Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1496760.1

Overview

Field Value
Gene ID Lj5g3v1496760
Transcript ID Lj5g3v1496760.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max] gi|356535069|ref|XP_003536071.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11227:SF25
1 278 278 4.30E-154 –
PANTHER
PTHR11227
1 278 278 4.30E-154 –
SUPERFAMILY
SSF50978
2 176 175 3.30E-23
IPR017986
Gene3D
G3DSA:2.130.10.10
2 175 174 2.40E-20
IPR015943
SMART
SM00320
7 42 36 320
IPR001680
SMART
SM00320
89 129 41 0.2
IPR001680
SMART
SM00320
132 173 42 0.0093
IPR001680
Pfam
PF00400
142 173 32 0.0017
IPR001680
Gene3D
G3DSA:2.130.10.10
216 249 34 2.40E-20
IPR015943
SUPERFAMILY
SSF50978
226 253 28 3.30E-23
IPR017986

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj5g3v1496760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1496760.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.