Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1519830.3

Overview

Field	Value
Gene ID	Lj5g3v1519830
Transcript ID	Lj5g3v1519830.3
Related isoforms 2	Lj5g3v1519830.1 Lj5g3v1519830.2
Lotus japonicus genome version	MG20 v3.0
Description	Uncharacterized protein isoform 2 [Theobroma cacao] gi\|508719761\|gb\|EOY11658.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	455	455	–	–
PANTHER	PTHR12444:SF3 View details on PTHR12444:SF3 Search for proteins/transripts with this domain View external data on PTHR12444:SF3	2	893	892	0	–
PANTHER	PTHR12444 View details on PTHR12444 Search for proteins/transripts with this domain View external data on PTHR12444	2	893	892	0	–
SUPERFAMILY	SSF48371 View details on SSF48371 Search for proteins/transripts with this domain View external data on SSF48371	56	243	188	5.42E-06	IPR016024 Show description in modal box View details on IPR016024 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF48371 View details on SSF48371 Search for proteins/transripts with this domain View external data on SSF48371	281	516	236	5.42E-06	IPR016024 Show description in modal box View details on IPR016024 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	456	477	22	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	478	675	198	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	676	692	17	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	693	703	11	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	704	722	19	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	723	923	201	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	846	866	21	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 80

Expression data

Expression pattern

Expression pattern of Lj5g3v1519830.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1519830.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.