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Lj5g3v1793370.1

Overview

Field Value
Gene ID Lj5g3v1793370
Transcript ID Lj5g3v1793370.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: trihelix transcription factor GTL1-like [Cicer arietinum] gi|502118337|ref|XP_004496217.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 53 53 – –
PANTHER
PTHR33492
14 80 67 1.20E-103 –
PANTHER
PTHR33492:SF5
14 80 67 1.20E-103 –
Gene3D
G3DSA:1.10.10.60
52 67 16 5.40E-05
IPR009057
Pfam
PF13837
55 173 119 8.60E-10 –
MobiDBLite
mobidb-lite
72 109 38 – –
Gene3D
G3DSA:1.10.10.60
111 147 37 5.40E-05
IPR009057
PANTHER
PTHR33492
113 369 257 1.20E-103 –
PANTHER
PTHR33492:SF5
113 369 257 1.20E-103 –
MobiDBLite
mobidb-lite
209 296 88 – –
Coils
Coil
309 343 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v1793370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1793370.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.