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Lj5g3v1949820.1

Overview

Field Value
Gene ID Lj5g3v1949820
Transcript ID Lj5g3v1949820.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Tubby-like F-box protein [Medicago truncatula] gi|357443657|ref|XP_003592106.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16517:SF31
1 434 434 0 –
PANTHER
PTHR16517
1 434 434 0 –
SUPERFAMILY
SSF81383
48 97 50 2.88E-06
IPR001810
Gene3D
G3DSA:1.20.1280.50
49 96 48 1.30E-06 –
Pfam
PF00646
52 105 54 2.90E-10
IPR001810
SUPERFAMILY
SSF54518
102 288 187 2.01E-100
IPR025659
Gene3D
G3DSA:3.20.90.10
112 284 173 2.90E-93
IPR000007
Pfam
PF01167
118 428 311 1.10E-94
IPR000007
PRINTS
PR01573
169 185 17 3.90E-80
IPR000007
PRINTS
PR01573
185 209 25 3.90E-80
IPR000007
PRINTS
PR01573
234 261 28 3.90E-80
IPR000007
Gene3D
G3DSA:3.20.90.10
320 428 109 2.90E-93
IPR000007
SUPERFAMILY
SSF54518
324 434 111 2.01E-100
IPR025659
PRINTS
PR01573
330 347 18 3.90E-80
IPR000007
ProSitePatterns
PS01200
348 361 14 –
IPR018066
PRINTS
PR01573
348 364 17 3.90E-80
IPR000007
MobiDBLite
mobidb-lite
368 391 24 – –
PRINTS
PR01573
391 410 20 3.90E-80
IPR000007
PRINTS
PR01573
412 434 23 3.90E-80
IPR000007
ProSitePatterns
PS01201
419 434 16 –
IPR018066

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj5g3v1949820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1949820.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.