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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1957010 |
| Transcript ID | Lj5g3v1957010.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein RFT1 homolog isoform X1 [Cicer arietinum] gi|502168987|ref|XP_004514510.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 517 | 517 | 2.00E-206 | ||
| Phobius | 1 | 43 | 43 | – | – | |
| CDD | 9 | 441 | 433 | 0 | – | |
| Pfam | 13 | 512 | 500 | 2.30E-130 | ||
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 44 | 62 | 19 | – | – | |
| TMHMM | 45 | 62 | 18 | – | – | |
| Phobius | 63 | 91 | 29 | – | – | |
| Phobius | 92 | 114 | 23 | – | – | |
| TMHMM | 92 | 114 | 23 | – | – | |
| Phobius | 115 | 125 | 11 | – | – | |
| TMHMM | 124 | 146 | 23 | – | – | |
| Phobius | 126 | 145 | 20 | – | – | |
| Phobius | 146 | 156 | 11 | – | – | |
| Phobius | 157 | 175 | 19 | – | – | |
| Phobius | 176 | 186 | 11 | – | – | |
| TMHMM | 185 | 207 | 23 | – | – | |
| Phobius | 187 | 208 | 22 | – | – | |
| Phobius | 209 | 317 | 109 | – | – | |
| Phobius | 318 | 337 | 20 | – | – | |
| TMHMM | 320 | 339 | 20 | – | – | |
| Phobius | 338 | 356 | 19 | – | – | |
| Phobius | 357 | 381 | 25 | – | – | |
| TMHMM | 359 | 381 | 23 | – | – | |
| Phobius | 382 | 392 | 11 | – | – | |
| Phobius | 393 | 410 | 18 | – | – | |
| TMHMM | 396 | 418 | 23 | – | – | |
| Phobius | 411 | 415 | 5 | – | – | |
| Phobius | 416 | 435 | 20 | – | – | |
| Phobius | 436 | 446 | 11 | – | – | |
| TMHMM | 445 | 467 | 23 | – | – | |
| Phobius | 447 | 467 | 21 | – | – | |
| Phobius | 468 | 478 | 11 | – | – | |
| Phobius | 479 | 501 | 23 | – | – | |
| TMHMM | 482 | 501 | 20 | – | – | |
| Phobius | 502 | 519 | 18 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid transporter activity | Enables the directed movement of lipids into, out of or within a cell, or between cells. | ||
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v1957010.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1957010.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.