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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1974400 |
| Transcript ID | Lj5g3v1974400.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Cicer arietinum] gi|502177314|ref|XP_004516054.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 433 | 433 | 7.50E-230 | – | |
| Phobius | 1 | 40 | 40 | – | – | |
| PANTHER | 1 | 433 | 433 | 7.50E-230 | ||
| Phobius | 1 | 17 | 17 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 18 | 36 | 19 | – | – | |
| Phobius | 37 | 40 | 4 | – | – | |
| Phobius | 41 | 435 | 395 | – | – | |
| Pfam | 91 | 419 | 329 | 1.70E-103 | ||
| SUPERFAMILY | 102 | 158 | 57 | 7.20E-17 | ||
| Gene3D | 105 | 320 | 216 | 6.10E-07 | ||
| SUPERFAMILY | 189 | 423 | 235 | 7.20E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi stack | The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. | ||
| Molecular function | Alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R. | ||
| Biological process | Oligosaccharide biosynthetic process | The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v1974400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1974400.1, powered by CORGI.
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