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Lj5g3v1998980.1

Overview

Field Value
Gene ID Lj5g3v1998980
Transcript ID Lj5g3v1998980.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: methyltransferase-like protein 1-like isoform X1 [Cicer arietinum] gi|502119204|ref|XP_004496538.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 411 411 – –
PANTHER
PTHR13107:SF0
9 485 477 0 –
PANTHER
PTHR13107
9 485 477 0 –
MobiDBLite
mobidb-lite
426 557 132 – –
PANTHER
PTHR13107:SF0
502 1104 603 0 –
PANTHER
PTHR13107
502 1104 603 0 –
ProSiteProfiles
PS51592
549 1089 541 79.665 –
MobiDBLite
mobidb-lite
657 680 24 – –
ProSiteProfiles
PS51143
734 973 240 45.032
IPR007757
SUPERFAMILY
SSF53335
766 922 157 3.48E-12
IPR029063
Gene3D
G3DSA:3.40.50.150
773 884 112 4.00E-05
IPR029063
Pfam
PF05063
775 953 179 5.70E-51
IPR007757
ProSitePatterns
PS00092
778 784 7 –
IPR002052
MobiDBLite
mobidb-lite
1004 1096 93 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of
GO:0032259
Biological process Methylation The process in which a methyl group is covalently attached to a molecule.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v1998980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1998980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.