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Lj5g3v2045400.1

Overview

Field Value
Gene ID Lj5g3v2045400
Transcript ID Lj5g3v2045400.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: heat stress transcription factor A-6b-like [Glycine max] gi|356574431|ref|XP_003555351.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR10015
27 340 314 1.10E-150
IPR027725
PANTHER
PTHR10015:SF139
27 340 314 1.10E-150 –
SMART
SM00415
37 130 94 1.20E-60
IPR000232
SUPERFAMILY
SSF46785
37 130 94 1.50E-36
IPR011991
Gene3D
G3DSA:1.10.10.10
37 130 94 6.00E-39
IPR011991
Pfam
PF00447
41 130 90 1.00E-29
IPR000232
PRINTS
PR00056
41 64 24 4.60E-19
IPR000232
PRINTS
PR00056
79 91 13 4.60E-19
IPR000232
ProSitePatterns
PS00434
80 104 25 –
IPR000232
PRINTS
PR00056
92 104 13 4.60E-19
IPR000232
Coils
Coil
157 177 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj5g3v2045400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2045400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.