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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000232
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We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.893s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0178269.1
n.a. PREDICTED: heat stress transcription factor B-2b-like [Cicer arietinum] gi|502175341|ref|XP_004515711.1| chr0 86423599 86423969 +
2 domain predictions
4 GO terms
Lj0g3v0340919.1
n.a. Heat stress transcription factor B-4 [Medicago truncatula] gi|357465547|ref|XP_003603058.1| chr0 178562238 178563930 -
5 domain predictions
4 GO terms
Lj1g3v4241070.1
n.a. PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor B-3-like [Cicer arietinum] gi|502108702|ref|XP_004493479.1| chr1 50058751 50062558 +
4 domain predictions
4 GO terms
Lj2g3v1863520.1
n.a. heat shock factor [Glycine max] gi|359807065|ref|NP_001241597.1| chr2 27879039 27880780 -
5 domain predictions
4 GO terms
Lj2g3v2017420.1
n.a. PREDICTED: heat stress transcription factor B-2b-like [Glycine max] gi|356539790|ref|XP_003538376.1| chr2 30826937 30829471 -
5 domain predictions
4 GO terms
Lj2g3v3019660.1
n.a. PREDICTED: heat stress transcription factor B-4 [Glycine max] gi|356499299|ref|XP_003518479.1| chr2 38982684 38984832 -
5 domain predictions
4 GO terms
Lj4g3v0451130.1
n.a. PREDICTED: heat stress transcription factor B-2a-like [Glycine max] gi|356495198|ref|XP_003516466.1| chr4 6614194 6615953 -
4 domain predictions
4 GO terms
Lj4g3v2618490.1
n.a. heat stress transcription factor A-4a-like protein [Caragana korshinskii] gi|480328109|gb|AGJ83756.1| chr4 35617248 35619279 -
5 domain predictions
4 GO terms
Lj5g3v2045400.1
n.a. PREDICTED: heat stress transcription factor A-6b-like [Glycine max] gi|356574431|ref|XP_003555351.1| chr5 29107816 29110262 -
5 domain predictions
4 GO terms
LotjaGi1g1v0052100.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b; TrEMBL-Plants: tr|A0A0L9UVT9|A0A0L9UVT9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0052100 LjG1.1_chr1 7354422 7356970 +
5 domain predictions
4 GO terms
LotjaGi1g1v0355900.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|G7J6F2|G7J6F2_MEDTR Heat shock transcription factor; Found in the gene: LotjaGi1g1v0355900 LjG1.1_chr1 82773625 82775575 -
5 domain predictions
4 GO terms
LotjaGi1g1v0367500.2
n.a. Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|I1JTX5|I1JTX5_SOYBN Heat shock transcription factor HSFA2; Found in the gene: LotjaGi1g1v0367500 LjG1.1_chr1 84550386 84555331 +
5 domain predictions
4 GO terms
LotjaGi1g1v0672000.1
n.a. Heat Stress Transcription Factor family protein; TAIR: AT2G41690.1 heat shock transcription factor B3; Swiss-Prot: sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3; TrEMBL-Plants: tr|I1JNB9|I1JNB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672000 LjG1.1_chr1 123639278 123643552 +
5 domain predictions
4 GO terms
LotjaGi1g1v0672000.2
n.a. Heat Stress Transcription Factor family protein; TAIR: AT2G41690.1 heat shock transcription factor B3; Swiss-Prot: sp|O22230|HSFB3_ARATH Heat stress transcription factor B-3; TrEMBL-Plants: tr|I1JNB9|I1JNB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0672000 LjG1.1_chr1 123639677 123643044 +
3 domain predictions
4 GO terms
LotjaGi1g1v0715700.1
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0L9T3E9|A0A0L9T3E9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0715700 LjG1.1_chr1 128392576 128398389 -
5 domain predictions
4 GO terms
LotjaGi1g1v0715700.2
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0L9T3E9|A0A0L9T3E9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0715700 LjG1.1_chr1 128395471 128397784 -
5 domain predictions
4 GO terms
LotjaGi2g1v0146100.1
n.a. Heat shock transcription factor; TAIR: AT5G62020.1 heat shock transcription factor B2A; Swiss-Prot: sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a; TrEMBL-Plants: tr|V7C2D0|V7C2D0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0146100 LjG1.1_chr2 52623676 52625465 +
5 domain predictions
4 GO terms
LotjaGi2g1v0215600.1
n.a. Heat shock transcription factor; TAIR: AT3G24520.1 heat shock transcription factor C1; Swiss-Prot: sp|Q9LV52|HSFC1_ARATH Heat stress transcription factor C-1; TrEMBL-Plants: tr|A0A0L9VGU4|A0A0L9VGU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0215600 LjG1.1_chr2 66743653 66746463 +
5 domain predictions
4 GO terms
LotjaGi2g1v0335200.1
n.a. Heat shock transcription factor family protein; TAIR: AT1G32330.1 heat shock transcription factor A1D; Swiss-Prot: sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d; TrEMBL-Plants: tr|G7KDN6|G7KDN6_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi2g1v0335200 LjG1.1_chr2 81120590 81125013 +
5 domain predictions
4 GO terms
LotjaGi2g1v0335200.2
n.a. Heat shock transcription factor family protein; TAIR: AT1G32330.1 heat shock transcription factor A1D; Swiss-Prot: sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d; TrEMBL-Plants: tr|G7KDN6|G7KDN6_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi2g1v0335200 LjG1.1_chr2 81120653 81124799 +
5 domain predictions
4 GO terms
LotjaGi2g1v0400800.1
n.a. Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|Q43457|Q43457_SOYBN Heat shock transcription factor 34; Found in the gene: LotjaGi2g1v0400800 LjG1.1_chr2 89825571 89828125 -
5 domain predictions
4 GO terms
LotjaGi2g1v0432300.1
n.a. Heat shock transcription factor; TAIR: AT4G11660.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9T0D3|HFB2B_ARATH Heat stress transcription factor B-2b; TrEMBL-Plants: tr|A0A0S3T5M2|A0A0S3T5M2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0432300 LjG1.1_chr2 92921887 92926352 -
5 domain predictions
4 GO terms
LotjaGi3g1v0542200.1
n.a. Heat shock transcription factor; TAIR: AT5G16820.1 heat shock factor 3; Swiss-Prot: sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1; TrEMBL-Plants: tr|G7JSS3|G7JSS3_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi3g1v0542200 LjG1.1_chr3 95873589 95876759 +
5 domain predictions
4 GO terms
LotjaGi4g1v0055500.1
n.a. Heat shock transcription factor; TAIR: AT5G62020.1 heat shock transcription factor B2A; Swiss-Prot: sp|Q338B0|HFA2C_ORYSJ Heat stress transcription factor A-2c; TrEMBL-Plants: tr|I3SY63|I3SY63_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0055500 LjG1.1_chr4 6689209 6691489 -
4 domain predictions
4 GO terms
LotjaGi4g1v0105200.1
n.a. Heat shock transcription factor; TAIR: AT4G36990.1 heat shock factor 4; Swiss-Prot: sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24; TrEMBL-Plants: tr|A0A0L9TIM3|A0A0L9TIM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0105200 LjG1.1_chr4 14646159 14649860 +
5 domain predictions
4 GO terms
LotjaGi4g1v0310700.1
n.a. Heat shock transcription factor; TAIR: AT2G26150.1 heat shock transcription factor A2; Swiss-Prot: sp|P41152|HSF30_SOLPE Heat shock factor protein HSF30; TrEMBL-Plants: tr|V7CBJ1|V7CBJ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0310700 LjG1.1_chr4 68692458 68694870 +
5 domain predictions
4 GO terms
LotjaGi4g1v0371300.1
n.a. Heat Stress Transcription Factor family protein; TAIR: AT4G13980.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5; TrEMBL-Plants: tr|I1K3S2|I1K3S2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0371300 LjG1.1_chr4 75071439 75075674 +
5 domain predictions
4 GO terms
LotjaGi4g1v0381000.1
n.a. Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|R9R6C4|R9R6C4_9FABA Heat stress transcription factor A-4a-like protein; Found in the gene: LotjaGi4g1v0381000 LjG1.1_chr4 75995795 76001066 -
5 domain predictions
4 GO terms
LotjaGi4g1v0458500.1
n.a. Heat shock transcription factor; TAIR: AT1G67970.1 heat shock transcription factor A8; Swiss-Prot: sp|Q9S7U5|HSFA8_ARATH Heat stress transcription factor A-8; TrEMBL-Plants: tr|I3SJN5|I3SJN5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0458500 LjG1.1_chr4 82946789 82949918 +
5 domain predictions
4 GO terms
LotjaGi5g1v0091400.1
n.a. Heat shock transcription factor family protein; TAIR: AT5G03720.1 heat shock transcription factor A3; Swiss-Prot: sp|Q8GYY1|HSFA3_ARATH Heat stress transcription factor A-3; TrEMBL-Plants: tr|A0A072VKE1|A0A072VKE1_MEDTR Heat shock transcription factor A3; Found in the gene: LotjaGi5g1v0091400 LjG1.1_chr5 15976538 15979381 +
5 domain predictions
4 GO terms
LotjaGi5g1v0171400.1
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0B2P8E5|A0A0B2P8E5_GLYSO Heat stress transcription factor A-6b; Found in the gene: LotjaGi5g1v0171400 LjG1.1_chr5 43992078 44010264 +
5 domain predictions
4 GO terms
LotjaGi5g1v0171400.2
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0B2P8E5|A0A0B2P8E5_GLYSO Heat stress transcription factor A-6b; Found in the gene: LotjaGi5g1v0171400 LjG1.1_chr5 44006388 44009700 +
5 domain predictions
4 GO terms
LotjaGi5g1v0171400.3
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|A0A0B2P8E5|A0A0B2P8E5_GLYSO Heat stress transcription factor A-6b; Found in the gene: LotjaGi5g1v0171400 LjG1.1_chr5 44006778 44010264 +
5 domain predictions
4 GO terms
LotjaGi5g1v0310300.1
n.a. Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|I1NGK0|I1NGK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0310300 LjG1.1_chr5 62843551 62846893 -
5 domain predictions
4 GO terms
LotjaGi6g1v0178100.1
n.a. Heat shock transcription factor; TAIR: AT1G46264.1 heat shock transcription factor B4; Swiss-Prot: sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4; TrEMBL-Plants: tr|A0A151SI68|A0A151SI68_CAJCA Heat stress transcription factor B-4; Found in the gene: LotjaGi6g1v0178100 LjG1.1_chr6 47011921 47013736 -
5 domain predictions
4 GO terms
LotjaGi6g1v0318700.1
n.a. Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|I1M1P7|I1M1P7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0318700 LjG1.1_chr6 63573549 63579436 +
5 domain predictions
4 GO terms