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Lj5g3v2046050.1

Overview

Field	Value
Gene ID	Lj5g3v2046050
Transcript ID	Lj5g3v2046050.1
Related isoforms 1	Lj5g3v2046050.2
Lotus japonicus genome version	MG20 v3.0
Description	Photosystem II 11 kDa protein-related [Theobroma cacao] gi\|508713787\|gb\|EOY05684.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34041:SF3 View details on PTHR34041:SF3 Search for proteins/transripts with this domain View external data on PTHR34041:SF3	1	208	208	2.30E-105	–
PANTHER	PTHR34041 View details on PTHR34041 Search for proteins/transripts with this domain View external data on PTHR34041	1	208	208	2.30E-105	–
Pfam	PF13326 View details on PF13326 Search for proteins/transripts with this domain View external data on PF13326	46	208	163	9.40E-53	IPR025585 Show description in modal box View details on IPR025585 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_01481 View details on MF_01481 Search for proteins/transripts with this domain View external data on MF_01481	82	208	127	20.4	IPR025585 Show description in modal box View details on IPR025585 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010207 View details of GO:0010207 AmiGO InterPro QuickGO	Biological process	Photosystem II assembly	The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.	Subterm of View details of GO:0034622 Part of View details of GO:0019684

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj5g3v2046050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2046050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.