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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2067220 |
| Transcript ID | Lj5g3v2067220.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine max] gi|356574333|ref|XP_003555303.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 132 | 132 | – | – | |
| PANTHER | 35 | 189 | 155 | 0 | – | |
| PANTHER | 35 | 189 | 155 | 0 | – | |
| MobiDBLite | 171 | 202 | 32 | – | – | |
| SMART | 204 | 236 | 33 | 1.00E-06 | ||
| PANTHER | 206 | 333 | 128 | 0 | – | |
| PANTHER | 206 | 333 | 128 | 0 | – | |
| Pfam | 207 | 234 | 28 | 2.00E-09 | ||
| ProSiteProfiles | 207 | 236 | 30 | 12.334 | ||
| CDD | 207 | 234 | 28 | 2.15E-07 | – | |
| SUPERFAMILY | 208 | 242 | 35 | 3.71E-09 | ||
| Gene3D | 208 | 237 | 30 | 1.40E-12 | – | |
| ProSitePatterns | 209 | 234 | 26 | – | ||
| SUPERFAMILY | 237 | 278 | 42 | 2.08E-10 | ||
| ProSiteProfiles | 244 | 277 | 34 | 12.925 | ||
| SMART | 245 | 277 | 33 | 5.40E-08 | ||
| CDD | 248 | 277 | 30 | 5.45E-08 | – | |
| Pfam | 249 | 275 | 27 | 2.20E-08 | ||
| Gene3D | 249 | 279 | 31 | 7.80E-15 | – | |
| MobiDBLite | 295 | 314 | 20 | – | – | |
| MobiDBLite | 406 | 446 | 41 | – | – | |
| PANTHER | 413 | 881 | 469 | 0 | – | |
| PANTHER | 413 | 881 | 469 | 0 | – | |
| SUPERFAMILY | 462 | 523 | 62 | 4.58E-17 | ||
| Gene3D | 465 | 525 | 61 | 2.00E-20 | ||
| SMART | 468 | 522 | 55 | 4.00E-12 | ||
| ProSiteProfiles | 468 | 522 | 55 | 11.389 | ||
| Pfam | 470 | 519 | 50 | 1.40E-14 | ||
| Coils | 516 | 541 | 26 | – | – | |
| SUPERFAMILY | 526 | 591 | 66 | 3.01E-14 | ||
| Gene3D | 526 | 591 | 66 | 1.90E-18 | ||
| ProSiteProfiles | 535 | 590 | 56 | 13.499 | ||
| SMART | 535 | 590 | 56 | 5.10E-11 | ||
| Pfam | 537 | 585 | 49 | 3.10E-14 | ||
| Gene3D | 595 | 660 | 66 | 4.10E-08 | ||
| SUPERFAMILY | 599 | 664 | 66 | 3.79E-10 | ||
| ProSiteProfiles | 603 | 657 | 55 | 11.903 | ||
| SMART | 603 | 657 | 55 | 0.0057 | ||
| Pfam | 608 | 654 | 47 | 2.20E-08 | ||
| Coils | 651 | 690 | 40 | – | – | |
| Gene3D | 667 | 740 | 74 | 2.50E-06 | ||
| SUPERFAMILY | 670 | 745 | 76 | 8.95E-10 | ||
| ProSiteProfiles | 675 | 738 | 64 | 9.911 | ||
| SMART | 677 | 738 | 62 | 3.8 | ||
| Pfam | 679 | 734 | 56 | 1.20E-07 | ||
| Coils | 729 | 756 | 28 | – | – | |
| ProSiteProfiles | 743 | 798 | 56 | 7.595 | ||
| Coils | 792 | 812 | 21 | – | – | |
| Gene3D | 800 | 867 | 68 | 4.50E-10 | ||
| SUPERFAMILY | 803 | 872 | 70 | 2.35E-11 | ||
| ProSiteProfiles | 810 | 865 | 56 | 8.721 | ||
| SMART | 810 | 865 | 56 | 3.10E-04 | ||
| Pfam | 815 | 862 | 48 | 4.20E-05 | ||
| Coils | 856 | 882 | 27 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2067220.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2067220.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.