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Lj5g3v2241450.1

Overview

Field Value
Gene ID Lj5g3v2241450
Transcript ID Lj5g3v2241450.1
Lotus japonicus genome version MG20 v3.0
Description B3 domain-containing transcription factor VRN1 [Medicago truncatula] gi|357460337|ref|XP_003600450.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50863
1 70 70 12.196
IPR003340
SMART
SM01019
2 70 69 1.3
IPR003340
SUPERFAMILY
SSF101936
4 70 67 1.96E-13
IPR015300
CDD
cd10017
6 68 63 5.01E-11
IPR003340
Gene3D
G3DSA:2.40.330.10
7 80 74 1.70E-14
IPR015300
PANTHER
PTHR31674:SF1
7 130 124 1.60E-48 –
PANTHER
PTHR31674
7 130 124 1.60E-48 –
Pfam
PF02362
10 66 57 4.00E-09
IPR003340
PANTHER
PTHR31674:SF1
185 272 88 1.60E-48 –
PANTHER
PTHR31674
185 272 88 1.60E-48 –
Gene3D
G3DSA:2.40.330.10
186 282 97 2.80E-13
IPR015300
SUPERFAMILY
SSF101936
187 280 94 3.27E-13
IPR015300
CDD
cd10017
189 282 94 4.31E-11
IPR003340
SMART
SM01019
191 284 94 0.0047
IPR003340
ProSiteProfiles
PS50863
191 284 94 10.729
IPR003340
Pfam
PF02362
195 281 87 1.40E-10
IPR003340

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v2241450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2241450.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.