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Lj5g3v2257200.1

Overview

Field Value
Gene ID Lj5g3v2257200
Transcript ID Lj5g3v2257200.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DDB1- and CUL4-associated factor 8-like [Glycine max] gi|356536404|ref|XP_003536728.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15574:SF41
11 493 483 0 –
PANTHER
PTHR15574
11 493 483 0 –
SUPERFAMILY
SSF50978
41 281 241 2.29E-49
IPR017986
Gene3D
G3DSA:2.130.10.10
42 408 367 1.50E-54
IPR015943
SMART
SM00320
42 81 40 1.50E-07
IPR001680
Pfam
PF00400
47 81 35 5.70E-06
IPR001680
ProSiteProfiles
PS50294
49 180 132 17.561
IPR017986
ProSiteProfiles
PS50082
49 90 42 15.321
IPR001680
SMART
SM00320
84 126 43 2.6
IPR001680
SMART
SM00320
131 171 41 3.4
IPR001680
SMART
SM00320
191 224 34 32
IPR001680
SMART
SM00320
241 280 40 270
IPR001680
MobiDBLite
mobidb-lite
296 321 26 – –
SMART
SM00320
322 364 43 0.62
IPR001680
Pfam
PF00400
327 364 38 0.019
IPR001680
SUPERFAMILY
SSF50978
329 405 77 2.29E-49
IPR017986
ProSiteProfiles
PS50294
344 415 72 10.812
IPR017986
SMART
SM00320
367 406 40 0.013
IPR001680
MobiDBLite
mobidb-lite
473 496 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj5g3v2257200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2257200.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.