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Lj5g3v2262840.2

Overview

Field Value
Gene ID Lj5g3v2262840
Transcript ID Lj5g3v2262840.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: high mobility group B protein 7-like isoform X2 [Cicer arietinum] gi|502121289|ref|XP_004497257.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13711:SF147
8 42 35 1.30E-59 –
PANTHER
PTHR13711
8 42 35 1.30E-59 –
Coils
Coil
56 76 21 – –
PANTHER
PTHR13711:SF147
61 177 117 1.30E-59 –
PANTHER
PTHR13711
61 177 117 1.30E-59 –
MobiDBLite
mobidb-lite
67 107 41 – –
SUPERFAMILY
SSF47095
93 172 80 7.59E-25
IPR009071
Gene3D
G3DSA:1.10.30.10
100 173 74 1.30E-23
IPR009071
SMART
SM00398
101 172 72 1.90E-23
IPR009071
Pfam
PF00505
102 171 70 1.90E-21
IPR009071
ProSiteProfiles
PS50118
102 171 70 19.342
IPR009071
CDD
cd01390
102 168 67 4.10E-17 –
Coils
Coil
149 176 28 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj5g3v2262840.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2262840.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.