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Lj5g3v2264060.1

Overview

Field Value
Gene ID Lj5g3v2264060
Transcript ID Lj5g3v2264060.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WUSCHEL-related homeobox 13-like [Glycine max] gi|356536482|ref|XP_003536766.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46689
87 156 70 3.85E-18
IPR009057
Gene3D
G3DSA:1.10.10.60
87 157 71 5.30E-17
IPR009057
ProSiteProfiles
PS50071
90 155 66 14.997
IPR001356
SMART
SM00389
92 159 68 7.60E-13
IPR001356
PANTHER
PTHR24326:SF275
94 188 95 6.00E-46 –
CDD
cd00086
94 155 62 1.15E-13 –
PANTHER
PTHR24326
94 188 95 6.00E-46 –
Pfam
PF00046
94 154 61 4.40E-19
IPR001356
MobiDBLite
mobidb-lite
153 181 29 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj5g3v2264060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2264060.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.