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Lj5g3v2288990.2

Overview

Field	Value
Gene ID	Lj5g3v2288990
Transcript ID	Lj5g3v2288990.2
Related isoforms 2	Lj5g3v2288990.1 Lj5g3v2288990.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: leukocyte receptor cluster member 8 homolog isoform X3 [Cicer arietinum] gi\|502117423\|ref\|XP_004495816.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	95	95	–	–
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	41	224	184	1.30E-298	–
PANTHER	PTHR12436:SF4 View details on PTHR12436:SF4 Search for proteins/transripts with this domain View external data on PTHR12436:SF4	41	224	184	1.30E-298	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	209	231	23	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	269	294	26	–	–
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	350	925	576	1.30E-298	–
PANTHER	PTHR12436:SF4 View details on PTHR12436:SF4 Search for proteins/transripts with this domain View external data on PTHR12436:SF4	350	925	576	1.30E-298	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	519	553	35	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	575	609	35	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	643	679	37	–	–
Pfam	PF03399 View details on PF03399 Search for proteins/transripts with this domain View external data on PF03399	724	929	206	7.00E-27	IPR005062 Show description in modal box View details on IPR005062 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	941	1003	63	1.30E-298	–
PANTHER	PTHR12436:SF4 View details on PTHR12436:SF4 Search for proteins/transripts with this domain View external data on PTHR12436:SF4	941	1003	63	1.30E-298	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v2288990.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2288990.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.