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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2298230 |
| Transcript ID | Lj5g3v2298230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane protein 120 homolog [Glycine max] gi|356576897|ref|XP_003556566.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 4.70E-175 | ||
| PANTHER | 1 | 356 | 356 | 4.70E-175 | – | |
| Phobius | 1 | 138 | 138 | – | – | |
| Pfam | 8 | 345 | 338 | 8.70E-101 | ||
| Coils | 9 | 29 | 21 | – | – | |
| Phobius | 139 | 157 | 19 | – | – | |
| TMHMM | 139 | 158 | 20 | – | – | |
| Phobius | 158 | 168 | 11 | – | – | |
| TMHMM | 168 | 187 | 20 | – | – | |
| Phobius | 169 | 187 | 19 | – | – | |
| Phobius | 188 | 198 | 11 | – | – | |
| Phobius | 199 | 218 | 20 | – | – | |
| TMHMM | 199 | 218 | 20 | – | – | |
| Phobius | 219 | 229 | 11 | – | – | |
| TMHMM | 228 | 247 | 20 | – | – | |
| Phobius | 230 | 247 | 18 | – | – | |
| Phobius | 248 | 281 | 34 | – | – | |
| Phobius | 282 | 304 | 23 | – | – | |
| TMHMM | 282 | 304 | 23 | – | – | |
| Phobius | 305 | 315 | 11 | – | – | |
| Phobius | 316 | 341 | 26 | – | – | |
| TMHMM | 319 | 341 | 23 | – | – | |
| Phobius | 342 | 359 | 18 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj5g3v2298230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2298230.1, powered by CORGI.
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