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Lj6g3v0001230.1

Overview

Field Value
Gene ID Lj6g3v0001230
Transcript ID Lj6g3v0001230.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: calmodulin-like protein 11-like [Cicer arietinum] gi|502123095|ref|XP_004497995.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 146 146 3.80E-101
SUPERFAMILY 2 147 146 1.01E-53
Gene3D 5 72 68 7.80E-35
ProSiteProfiles 8 43 36 14.876
Pfam 12 73 62 8.20E-16
SMART 12 40 29 4.20E-07
CDD 12 74 63 4.60E-18
ProSitePatterns 21 33 13
ProSiteProfiles 44 79 36 14.011
SMART 48 76 29 1.30E-06
ProSitePatterns 57 69 13
Gene3D 73 147 75 6.90E-33
ProSiteProfiles 81 116 36 16.829
Pfam 84 146 63 7.50E-18
SMART 85 113 29 3.50E-07
CDD 85 146 62 2.91E-21
ProSitePatterns 94 106 13
ProSiteProfiles 117 150 34 15.35
SMART 121 149 29 5.10E-08
ProSitePatterns 130 142 13

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj6g3v0001230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0001230.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.