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Lj6g3v0028710.1

Overview

Field Value
Gene ID Lj6g3v0028710
Transcript ID Lj6g3v0028710.1
Lotus japonicus genome version MG20 v3.0
Description F-box/LRR-repeat protein [Medicago truncatula] gi|357480759|ref|XP_003610665.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
12 465 454 3.50E-79 –
PANTHER
PTHR32212:SF126
12 465 454 3.50E-79 –
ProSiteProfiles
PS50181
24 57 34 10.796
IPR001810
Gene3D
G3DSA:3.80.10.10
26 231 206 7.60E-13
IPR032675
Pfam
PF00646
26 62 37 1.10E-06
IPR001810
SUPERFAMILY
SSF81383
27 66 40 2.62E-10
IPR001810
SMART
SM00256
30 70 41 0.0081
IPR001810
SUPERFAMILY
SSF52047
139 234 96 1.67E-09 –
SUPERFAMILY
SSF52047
290 430 141 1.67E-09 –
Gene3D
G3DSA:3.80.10.10
321 341 21 7.60E-13
IPR032675
Pfam
PF08387
385 424 40 2.00E-08
IPR006566

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj6g3v0028710.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0028710.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.