Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v0109720.1

Overview

Field Value
Gene ID Lj6g3v0109720
Transcript ID Lj6g3v0109720.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable voltage-gated potassium channel subunit beta-like [Glycine max] gi|356575166|ref|XP_003555713.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.20.20.100
56 377 322 6.40E-106
IPR023210
PANTHER
PTHR11732:SF14
57 384 328 2.60E-153 –
PANTHER
PTHR11732
57 384 328 2.60E-153
IPR001395
SUPERFAMILY
SSF51430
57 375 319 9.95E-97
IPR023210
CDD
cd06660
59 372 314 3.34E-100
IPR023210
Pfam
PF00248
72 372 301 8.50E-70
IPR023210
PRINTS
PR01577
166 176 11 3.40E-15
IPR005399
PRINTS
PR01577
217 236 20 3.40E-15
IPR005399
PRINTS
PR01577
262 268 7 3.40E-15
IPR005399
PRINTS
PR01577
314 326 13 3.40E-15
IPR005399
PRINTS
PR01577
327 340 14 3.40E-15
IPR005399

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v0109720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0109720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.