Transcript — View — Lotus Base

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Lj6g3v0144960.1

Overview

Field	Value
Gene ID	Lj6g3v0144960
Transcript ID	Lj6g3v0144960.1
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: cell wall protein AWA1-like isoform X1 [Cicer arietinum] gi\|502123307\|ref\|XP_004498065.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33416:SF2 View details on PTHR33416:SF2 Search for proteins/transripts with this domain View external data on PTHR33416:SF2	1	718	718	0	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	950	950	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	51	51	–	–
PANTHER	PTHR33416 View details on PTHR33416 Search for proteins/transripts with this domain View external data on PTHR33416	1	718	718	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	75	132	58	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	606	636	31	–	–
PANTHER	PTHR33416 View details on PTHR33416 Search for proteins/transripts with this domain View external data on PTHR33416	750	943	194	0	–
PANTHER	PTHR33416:SF2 View details on PTHR33416:SF2 Search for proteins/transripts with this domain View external data on PTHR33416:SF2	750	943	194	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	781	807	27	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	877	943	67	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	951	970	20	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	971	972	2	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj6g3v0144960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0144960.1, powered by CORGI.

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