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Lj6g3v0156170.1

Overview

Field Value
Gene ID Lj6g3v0156170
Transcript ID Lj6g3v0156170.1
Lotus japonicus genome version MG20 v3.0
Description Fe-superoxide dismutase 1 precursor [Lotus japonicus] gi|46402890|gb|AAS92464.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11404:SF24
31 228 198 7.20E-135 –
PANTHER
PTHR11404
31 228 198 7.20E-135
IPR001189
SUPERFAMILY
SSF46609
58 145 88 5.63E-34
IPR019831
Pfam
PF00081
59 144 86 1.60E-28
IPR019831
PRINTS
PR01703
63 74 12 2.20E-13
IPR001189
Gene3D
G3DSA:1.10.287.990
77 144 68 4.50E-21 –
PRINTS
PR01703
84 97 14 2.20E-13
IPR001189
PRINTS
PR01703
127 140 14 2.20E-13
IPR001189
SUPERFAMILY
SSF54719
146 227 82 4.58E-20
IPR019832
Pfam
PF02777
151 225 75 5.70E-14
IPR019832
PRINTS
PR01703
180 188 9 2.20E-13
IPR001189

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004784
Molecular function Superoxide dismutase activity Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
Subterm of
GO:0006801
Biological process Superoxide metabolic process The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v0156170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0156170.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.