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Lj6g3v0497370.1

Overview

Field	Value
Gene ID	Lj6g3v0497370
Transcript ID	Lj6g3v0497370.1
Lotus japonicus genome version	MG20 v3.0
Description	RNA-binding CRS1 / YhbY domain protein [Theobroma cacao] gi\|508701835\|gb\|EOX93731.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31426:SF5 View details on PTHR31426:SF5 Search for proteins/transripts with this domain View external data on PTHR31426:SF5	69	481	413	4.90E-226	–
PANTHER	PTHR31426 View details on PTHR31426 Search for proteins/transripts with this domain View external data on PTHR31426	69	481	413	4.90E-226	–
ProSiteProfiles	PS51295 View details on PS51295 Search for proteins/transripts with this domain View external data on PS51295	194	291	98	18.258	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF75471 View details on SSF75471 Search for proteins/transripts with this domain View external data on SSF75471	195	287	93	2.62E-21	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01985 View details on PF01985 Search for proteins/transripts with this domain View external data on PF01985	196	280	85	5.80E-17	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM01103 View details on SM01103 Search for proteins/transripts with this domain View external data on SM01103	196	280	85	1.40E-21	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.30.110.60 View details on G3DSA:3.30.110.60 Search for proteins/transripts with this domain View external data on G3DSA:3.30.110.60	196	287	92	2.60E-18	IPR001890 Show description in modal box View details on IPR001890 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	313	340	28	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	427	459	33	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003723 View details of GO:0003723 AmiGO InterPro QuickGO	Molecular function	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.	Subterm of View details of GO:0003676

Genome browser

Expression data

Expression pattern

Expression pattern of Lj6g3v0497370.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v0497370.1, powered by CORGI.

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