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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0802160 |
| Transcript ID | Lj6g3v0802160.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable WRKY transcription factor 20 [Glycine max] gi|356524334|ref|XP_003530784.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | – | – | |
| PANTHER | 41 | 336 | 296 | 2.90E-177 | – | |
| PANTHER | 41 | 336 | 296 | 2.90E-177 | – | |
| ProSiteProfiles | 42 | 106 | 65 | 23.938 | ||
| Gene3D | 45 | 106 | 62 | 5.50E-27 | ||
| SUPERFAMILY | 46 | 106 | 61 | 6.02E-25 | ||
| SMART | 47 | 105 | 59 | 3.40E-34 | ||
| Pfam | 48 | 104 | 57 | 1.00E-24 | ||
| MobiDBLite | 140 | 182 | 43 | – | – | |
| Gene3D | 207 | 282 | 76 | 8.50E-38 | ||
| SUPERFAMILY | 214 | 282 | 69 | 1.44E-29 | ||
| ProSiteProfiles | 217 | 282 | 66 | 38.825 | ||
| SMART | 222 | 281 | 60 | 3.10E-39 | ||
| Pfam | 223 | 280 | 58 | 2.10E-26 | ||
| MobiDBLite | 369 | 399 | 31 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj6g3v0802160.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0802160.3, powered by CORGI.
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