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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0920170 |
| Transcript ID | Lj6g3v0920170.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|357459547|ref|XP_003600054.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 242 | 242 | 3.60E-146 | – | |
| PANTHER | 1 | 242 | 242 | 3.60E-146 | ||
| PIRSF | 1 | 244 | 244 | 5.90E-94 | ||
| Pfam | 6 | 225 | 220 | 1.10E-77 | ||
| SUPERFAMILY | 24 | 174 | 151 | 6.22E-52 | ||
| Gene3D | 91 | 171 | 81 | 7.30E-35 | ||
| Gene3D | 172 | 240 | 69 | 1.10E-25 | ||
| SUPERFAMILY | 175 | 238 | 64 | 4.42E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | ESCRT II complex | An endosomal sorting complex required for transport and functions downstream of ESCRT I complex. It consists of the class E vacuolar protein sorting (Vps) proteins and is required for the membrane recruitment of ESCRT III complex and binds to ubiquitinated cargoes. | ||
| Biological process | Multivesicular body sorting pathway | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. |
Expression pattern of Lj6g3v0920170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0920170.1, powered by CORGI.
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