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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1078260 |
| Transcript ID | Lj6g3v1078260.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable WRKY transcription factor 32 [Glycine max] gi|356543305|ref|XP_003540102.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 115 | 115 | – | – | |
| PANTHER | 76 | 427 | 352 | 3.00E-178 | – | |
| PANTHER | 76 | 427 | 352 | 3.00E-178 | – | |
| ProSiteProfiles | 141 | 205 | 65 | 17.752 | ||
| Gene3D | 143 | 205 | 63 | 1.70E-20 | ||
| SUPERFAMILY | 145 | 205 | 61 | 9.94E-20 | ||
| SMART | 146 | 204 | 59 | 3.10E-23 | ||
| Pfam | 148 | 203 | 56 | 1.20E-16 | ||
| MobiDBLite | 197 | 298 | 102 | – | – | |
| Gene3D | 303 | 378 | 76 | 3.20E-31 | ||
| ProSiteProfiles | 313 | 378 | 66 | 31.502 | ||
| SUPERFAMILY | 314 | 378 | 65 | 8.50E-27 | ||
| SMART | 318 | 377 | 60 | 1.30E-32 | ||
| Pfam | 320 | 375 | 56 | 2.70E-23 | ||
| MobiDBLite | 408 | 428 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj6g3v1078260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1078260.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.