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Lj6g3v1088830.3

Overview

Field	Value
Gene ID	Lj6g3v1088830
Transcript ID	Lj6g3v1088830.3
Related isoforms 2	Lj6g3v1088830.1 Lj6g3v1088830.2
Lotus japonicus genome version	MG20 v3.0
Description	Uncharacterized protein isoform 1 [Theobroma cacao] gi\|508782377\|gb\|EOY29633.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12136:SF49 View details on PTHR12136:SF49 Search for proteins/transripts with this domain View external data on PTHR12136:SF49	1	494	494	2.70E-279	–
PANTHER	PTHR12136 View details on PTHR12136 Search for proteins/transripts with this domain View external data on PTHR12136	1	494	494	2.70E-279	–
SUPERFAMILY	SSF55961 View details on SSF55961 Search for proteins/transripts with this domain View external data on SSF55961	148	312	165	2.75E-29	–
Gene3D	G3DSA:3.30.530.20 View details on G3DSA:3.30.530.20 Search for proteins/transripts with this domain View external data on G3DSA:3.30.530.20	149	349	201	4.80E-32	IPR023393 Show description in modal box View details on IPR023393 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00177 View details on cd00177 Search for proteins/transripts with this domain View external data on cd00177	153	337	185	4.64E-32	–
ProSiteProfiles	PS50848 View details on PS50848 Search for proteins/transripts with this domain View external data on PS50848	154	307	154	18.943	IPR002913 Show description in modal box View details on IPR002913 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01852 View details on PF01852 Search for proteins/transripts with this domain View external data on PF01852	173	318	146	1.70E-08	IPR002913 Show description in modal box View details on IPR002913 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	393	412	20	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	433	471	39	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008289 View details of GO:0008289 AmiGO InterPro QuickGO	Molecular function	Lipid binding	Interacting selectively and non-covalently with a lipid.	Subterm of View details of GO:0005488

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj6g3v1088830.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1088830.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.