Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002913
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 123 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 5.719s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0251169.1
n.a. PREDICTED: homeobox-leucine zipper protein ROC6-like [Cicer arietinum] gi|502175726|ref|XP_004515730.1| chr0 130257697 130261810 +
4 domain predictions
1 GO term
Lj0g3v0262429.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356517624|ref|XP_003527487.1| chr0 136033908 136035832 -
4 domain predictions
1 GO term
Lj0g3v0262429.2
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 [Cicer arietinum] gi|502171637|ref|XP_004515074.1| chr0 136033908 136039223 -
4 domain predictions
1 GO term
Lj0g3v0278949.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-8-like [Glycine max] gi|356507931|ref|XP_003522716.1| chr0 144771376 144775514 +
3 domain predictions
1 GO term
Lj0g3v0278949.3
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-8-like [Glycine max] gi|356507931|ref|XP_003522716.1| chr0 144773285 144775514 +
4 domain predictions
1 GO term
Lj0g3v0360389.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356520461|ref|XP_003528880.1| chr0 189801998 189806224 -
4 domain predictions
1 GO term
Lj0g3v0360389.2
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cicer arietinum] gi|502157383|ref|XP_004510857.1| chr0 189801998 189806388 -
4 domain predictions
1 GO term
Lj1g3v0052560.1
n.a. PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera] gi|225444363|ref|XP_002266688.1| chr1 535246 538588 +
4 domain predictions
1 GO term
Lj1g3v0116490.1
n.a. PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like [Glycine max] gi|356538313|ref|XP_003537648.1| chr1 1409059 1415436 +
3 domain predictions
1 GO term
Lj1g3v2611340.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356532068|ref|XP_003534596.1| chr1 30184549 30192401 -
4 domain predictions
1 GO term
Lj2g3v0632020.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] gi|356529444|ref|XP_003533302.1| chr2 8991469 8991942 -
3 domain predictions
1 GO term
Lj2g3v1509550.1
n.a. PREDICTED: homeobox-leucine zipper protein ROC3-like [Glycine max] gi|356529736|ref|XP_003533444.1| chr2 23864293 23869825 -
4 domain predictions
1 GO term
Lj3g3v0247270.1
n.a. PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max] gi|356556218|ref|XP_003546423.1| chr3 1464753 1472081 -
4 domain predictions
1 GO term
Lj3g3v0274640.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Cicer arietinum] gi|502081133|ref|XP_004486776.1| chr3 1657712 1665194 +
3 domain predictions
1 GO term
Lj3g3v0274640.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Cicer arietinum] gi|502081133|ref|XP_004486776.1| chr3 1658922 1665194 +
4 domain predictions
1 GO term
Lj3g3v0824750.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] gi|356532435|ref|XP_003534778.1| chr3 10191112 10200312 -
3 domain predictions
1 GO term
Lj3g3v1074990.1
n.a. TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] gi|109729905|tpg|DAA05766.1| chr3 14460388 14466975 +
3 domain predictions
1 GO term
Lj3g3v1074990.2
n.a. TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] gi|109729905|tpg|DAA05766.1| chr3 14460388 14466975 +
4 domain predictions
1 GO term
Lj3g3v1086330.1
n.a. Pleckstrin (PH) and lipid-binding START domains-containing protein isoform 1 [Theobroma cacao] gi|508787129|gb|EOY34385.1| chr3 14559445 14567068 -
4 domain predictions
1 GO term
Lj3g3v1338000.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356542838|ref|XP_003539872.1| chr3 17161692 17169474 -
4 domain predictions
1 GO term
Lj3g3v1338000.2
n.a. PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356550018|ref|XP_003543387.1| chr3 17161692 17169474 -
4 domain predictions
1 GO term
Lj3g3v1541360.1
n.a. PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera] gi|225444363|ref|XP_002266688.1| chr3 19748537 19751879 +
4 domain predictions
1 GO term
Lj3g3v2027310.1
n.a. PREDICTED: phosphatidylcholine transfer protein-like isoform X3 [Cicer arietinum] gi|502089444|ref|XP_004488913.1| chr3 25903632 25909628 +
3 domain predictions
1 GO term
Lj3g3v2315440.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Glycine max] gi|356526089|ref|XP_003531652.1| chr3 28367090 28375777 +
3 domain predictions
1 GO term
Lj3g3v2315440.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Glycine max] gi|356526089|ref|XP_003531652.1| chr3 28367973 28375777 +
4 domain predictions
1 GO term
Lj3g3v2316600.1
n.a. Protodermal factor 2 isoform 1 [Theobroma cacao] gi|508781368|gb|EOY28624.1| chr3 28468007 28471470 +
4 domain predictions
1 GO term
Lj3g3v2330840.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG11-like [Cicer arietinum] gi|502080451|ref|XP_004486568.1| chr3 29261596 29262579 +
3 domain predictions
1 GO term
Lj3g3v3085530.1
n.a. PREDICTED: homeobox-leucine zipper protein REVOLUTA-like [Glycine max] gi|356539327|ref|XP_003538150.1| chr3 38592356 38598815 -
4 domain predictions
1 GO term
Lj4g3v0060680.1
n.a. PREDICTED: PCTP-like protein-like [Cicer arietinum] gi|502153760|ref|XP_004509453.1| chr4 437476 439819 +
3 domain predictions
1 GO term
Lj4g3v0060680.2
n.a. PREDICTED: PCTP-like protein-like [Glycine max] gi|356520137|ref|XP_003528721.1| chr4 438111 439819 +
3 domain predictions
1 GO term
Lj4g3v0177480.1
n.a. PREDICTED: phosphatidylcholine transfer protein-like isoform X3 [Cicer arietinum] gi|502089444|ref|XP_004488913.1| chr4 2162988 2168984 -
3 domain predictions
1 GO term
Lj4g3v0782190.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356535894|ref|XP_003536477.1| chr4 12366702 12367277 -
3 domain predictions
1 GO term
Lj4g3v2665270.1
n.a. PREDICTED: homeobox-leucine zipper protein HOX32-like [Glycine max] gi|356528394|ref|XP_003532788.1| chr4 36047153 36053814 +
4 domain predictions
1 GO term
Lj5g3v0296220.1
n.a. PREDICTED: homeobox-leucine zipper protein HDG11-like [Glycine max] gi|356532433|ref|XP_003534777.1| chr5 2750387 2751227 +
3 domain predictions
1 GO term
Lj5g3v0802990.1
n.a. Protodermal factor 2 isoform 1 [Theobroma cacao] gi|508781368|gb|EOY28624.1| chr5 11444030 11445080 -
4 domain predictions
1 GO term
Lj5g3v0803020.1
n.a. Protodermal factor 2 isoform 1 [Theobroma cacao] gi|508781368|gb|EOY28624.1| chr5 11476574 11481120 -
4 domain predictions
1 GO term
Lj5g3v1264010.1
n.a. Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao] gi|508776581|gb|EOY23837.1| chr5 20137193 20140931 -
3 domain predictions
1 GO term
Lj5g3v1811660.1
n.a. Pleckstrin (PH) and lipid-binding START domains-containing protein [Theobroma cacao] gi|508726768|gb|EOY18665.1| chr5 25946483 25954658 +
4 domain predictions
1 GO term
Lj5g3v2016080.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356575937|ref|XP_003556092.1| chr5 28504573 28504878 -
2 domain predictions
1 GO term
Lj5g3v2017090.1
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] gi|356535894|ref|XP_003536477.1| chr5 28511890 28517227 -
4 domain predictions
1 GO term
Lj5g3v2017090.2
n.a. PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cicer arietinum] gi|502119362|ref|XP_004496593.1| chr5 28511890 28516803 -
4 domain predictions
1 GO term
Lj6g3v1088830.3
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782377|gb|EOY29633.1| chr6 13097087 13110014 -
3 domain predictions
1 GO term
Lj6g3v1602960.1
n.a. Kinase-START [Medicago truncatula] gi|357484695|ref|XP_003612635.1| chr6 18053161 18065008 +
4 domain predictions
1 GO term
Lj6g3v1654310.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Cicer arietinum] gi|502080067|ref|XP_004486450.1| chr6 18590800 18594367 +
4 domain predictions
1 GO term
LotjaGi1g1v0295900.1
n.a. StAR-related lipid transfer protein; TAIR: AT1G64720.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial; TrEMBL-Plants: tr|I3S0M3|I3S0M3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0295900 LjG1.1_chr1 71676719 71680625 -
3 domain predictions
1 GO term
LotjaGi1g1v0406500.1
n.a. Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500 LjG1.1_chr1 89542742 89549690 +
4 domain predictions
1 GO term
LotjaGi1g1v0406500.2
n.a. Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500 LjG1.1_chr1 89543309 89549302 +
4 domain predictions
1 GO term
LotjaGi1g1v0406500.3
n.a. Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500 LjG1.1_chr1 89543309 89549302 +
4 domain predictions
1 GO term
LotjaGi1g1v0468000.1
n.a. Homeobox leucine zipper protein; TAIR: AT4G00730.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2; TrEMBL-Plants: tr|A0A0S3RT53|A0A0S3RT53_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0468000 LjG1.1_chr1 97799738 97807921 -
4 domain predictions
1 GO term
LotjaGi1g1v0468000.2
n.a. Homeobox leucine zipper protein; TAIR: AT4G00730.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2; TrEMBL-Plants: tr|A0A0S3RT53|A0A0S3RT53_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0468000 LjG1.1_chr1 97800198 97807342 -
4 domain predictions
1 GO term