Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1161810.1

Overview

Field	Value
Gene ID	Lj6g3v1161810
Transcript ID	Lj6g3v1161810.1
Related isoforms 1	Lj6g3v1161810.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: polyphosphoinositide phosphatase-like [Glycine max] gi\|356532820\|ref\|XP_003534968.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	821	821	–	–
PANTHER	PTHR11200 View details on PTHR11200 Search for proteins/transripts with this domain View external data on PTHR11200	17	421	405	0	–
PANTHER	PTHR11200:SF131 View details on PTHR11200:SF131 Search for proteins/transripts with this domain View external data on PTHR11200:SF131	17	421	405	0	–
Pfam	PF02383 View details on PF02383 Search for proteins/transripts with this domain View external data on PF02383	94	391	298	4.50E-79	IPR002013 Show description in modal box View details on IPR002013 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50275 View details on PS50275 Search for proteins/transripts with this domain View external data on PS50275	158	555	398	74.791	IPR002013 Show description in modal box View details on IPR002013 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR11200:SF131 View details on PTHR11200:SF131 Search for proteins/transripts with this domain View external data on PTHR11200:SF131	476	781	306	0	–
PANTHER	PTHR11200 View details on PTHR11200 Search for proteins/transripts with this domain View external data on PTHR11200	476	781	306	0	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	812	834	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	822	842	21	–	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	843	843	1	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0042578 View details of GO:0042578 AmiGO InterPro QuickGO	Molecular function	Phosphoric ester hydrolase activity	Catalysis of the reaction: RPO-R' + H2O = RPOOH + R'H. This reaction is the hydrolysis of any phosphoric ester bond, any ester formed from orthophosphoric acid, O=P(OH)3.	Subterm of View details of GO:0016788

Genome browser

Expression data

Expression pattern

Expression pattern of Lj6g3v1161810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1161810.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.