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Lj6g3v1187470.2

Overview

Field Value
Gene ID Lj6g3v1187470
Transcript ID Lj6g3v1187470.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tubulin--tyrosine ligase-like protein 12-like isoform 1 [Glycine max] gi|356556388|ref|XP_003546508.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12241
9 112 104 3.40E-242 –
PANTHER
PTHR12241:SF13
9 112 104 3.40E-242
IPR027749
SUPERFAMILY
SSF52047
149 357 209 2.90E-14 –
Gene3D
G3DSA:3.80.10.10
153 244 92 6.20E-08
IPR032675
Gene3D
G3DSA:3.80.10.10
270 337 68 7.50E-05
IPR032675
PANTHER
PTHR12241
377 858 482 3.40E-242 –
PANTHER
PTHR12241:SF13
377 858 482 3.40E-242
IPR027749
ProSiteProfiles
PS51221
530 866 337 32.639
IPR004344
Pfam
PF03133
584 834 251 2.70E-51
IPR004344

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006464
Biological process Cellular protein modification process The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj6g3v1187470.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1187470.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.