Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj6g3v1187500.1

Overview

Field Value
Gene ID Lj6g3v1187500
Transcript ID Lj6g3v1187500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/LRR-repeat protein 13-like [Cicer arietinum] gi|502165232|ref|XP_004513482.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 176 176 – –
PANTHER
PTHR24006:SF493
139 243 105 4.40E-83 –
PANTHER
PTHR24006
139 243 105 4.40E-83 –
MobiDBLite
mobidb-lite
196 217 22 – –
MobiDBLite
mobidb-lite
235 264 30 – –
PANTHER
PTHR24006:SF493
349 700 352 4.40E-83 –
PANTHER
PTHR24006
349 700 352 4.40E-83 –
SUPERFAMILY
SSF52047
379 684 306 7.06E-30 –
SMART
SM00367
431 456 26 23
IPR006553
SMART
SM00367
457 482 26 15
IPR006553
Gene3D
G3DSA:3.80.10.10
485 688 204 1.90E-32
IPR032675
SMART
SM00367
537 562 26 0.27
IPR006553
SMART
SM00367
563 588 26 77
IPR006553
SMART
SM00367
615 640 26 620
IPR006553
SMART
SM00367
641 666 26 0.28
IPR006553
SMART
SM00367
667 688 22 240
IPR006553

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj6g3v1187500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1187500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.