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Lj6g3v1249640.1

Overview

Field Value
Gene ID Lj6g3v1249640
Transcript ID Lj6g3v1249640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation machinery-associated protein 22-like isoform 1 [Glycine max] gi|356530368|ref|XP_003533754.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12789
1 192 192 3.10E-88 –
TIGRFAM
TIGR01159
7 182 176 1.00E-52
IPR005873
SUPERFAMILY
SSF55159
19 53 35 1.15E-28
IPR001950
MobiDBLite
mobidb-lite
62 93 32 – –
Gene3D
G3DSA:3.30.780.10
94 173 80 2.60E-13
IPR001950
SUPERFAMILY
SSF55159
94 184 91 1.15E-28
IPR001950
Pfam
PF01253
99 172 74 1.80E-19
IPR001950
CDD
cd11607
100 185 86 2.51E-41 –
ProSiteProfiles
PS50296
102 173 72 19.024
IPR001950

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1249640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1249640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.