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Lj6g3v1270770.1

Overview

Field Value
Gene ID Lj6g3v1270770
Transcript ID Lj6g3v1270770.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: GATA transcription factor 21-like [Glycine max] gi|356532708|ref|XP_003534913.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
60 92 33 – –
PANTHER
PTHR10071:SF191
72 158 87 1.30E-40 –
PANTHER
PTHR10071
72 158 87 1.30E-40 –
PANTHER
PTHR10071
180 231 52 1.30E-40 –
PANTHER
PTHR10071:SF191
180 231 52 1.30E-40 –
SMART
SM00401
185 236 52 2.00E-17
IPR000679
SUPERFAMILY
SSF57716
187 224 38 9.98E-13 –
ProSiteProfiles
PS50114
189 221 33 12.36
IPR000679
Gene3D
G3DSA:3.30.50.10
189 224 36 3.20E-15
IPR013088
CDD
cd00202
190 218 29 2.67E-12 –
Pfam
PF00320
191 224 34 2.70E-16
IPR000679
ProSitePatterns
PS00344
191 216 26 –
IPR000679
MobiDBLite
mobidb-lite
258 281 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj6g3v1270770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1270770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.