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Lj6g3v1588720.1

Overview

Field Value
Gene ID Lj6g3v1588720
Transcript ID Lj6g3v1588720.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ribose-5-phosphate isomerase-like [Cicer arietinum] gi|502080272|ref|XP_004486512.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11934:SF8
1 288 288 1.80E-163 –
PANTHER
PTHR11934
1 288 288 1.80E-163
IPR004788
SUPERFAMILY
SSF100950
49 190 142 1.09E-15 –
Gene3D
G3DSA:3.40.50.1360
49 191 143 2.10E-30 –
CDD
cd01398
49 275 227 1.06E-50
IPR004788
Pfam
PF06026
94 277 184 1.70E-34
IPR004788
SUPERFAMILY
SSF75445
180 263 84 1.44E-09 –
Gene3D
G3DSA:3.30.70.260
192 262 71 4.50E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004751
Molecular function Ribose-5-phosphate isomerase activity Catalysis of the reaction: D-ribose 5-phosphate = D-ribulose 5-phosphate.
Subterm of
GO:0009052
Biological process Pentose-phosphate shunt, non-oxidative branch The branch of the pentose-phosphate shunt which does not involve oxidation reactions. It comprises a series of sugar phosphate interconversions, starting with ribulose 5-P and producing fructose 6-P and glyceraldehyde 3-P.
Subterm of
Part of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj6g3v1588720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1588720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.