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Lj6g3v1752980.1

Overview

Field Value
Gene ID Lj6g3v1752980
Transcript ID Lj6g3v1752980.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: thymidine kinase-like [Glycine max] gi|356557967|ref|XP_003547281.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
39 167 129 0.001
IPR027417
MobiDBLite
mobidb-lite
49 70 22 – –
PANTHER
PTHR11441:SF2
60 278 219 1.20E-164 –
PANTHER
PTHR11441
60 278 219 1.20E-164
IPR001267
Pfam
PF00265
77 254 178 3.60E-55
IPR001267
SUPERFAMILY
SSF52540
77 215 139 1.26E-38
IPR027417
SUPERFAMILY
SSF57716
215 260 46 1.38E-11 –
Gene3D
G3DSA:3.30.60.20
215 256 42 4.00E-18 –
ProSitePatterns
PS00603
241 254 14 –
IPR020633

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004797
Molecular function Thymidine kinase activity Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj6g3v1752980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1752980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.