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Lj6g3v1825300.1

Overview

Field Value
Gene ID Lj6g3v1825300
Transcript ID Lj6g3v1825300.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: WRKY transcription factor 6-like [Glycine max] gi|356555684|ref|XP_003546160.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR31429
40 572 533 7.60E-259 –
PANTHER
PTHR31429:SF16
40 572 533 7.60E-259 –
MobiDBLite
mobidb-lite
115 135 21 – –
Coils
Coil
134 161 28 – –
MobiDBLite
mobidb-lite
191 299 109 – –
Gene3D
G3DSA:2.20.25.80
303 379 77 7.20E-33
IPR003657
SUPERFAMILY
SSF118290
311 379 69 1.27E-27
IPR003657
ProSiteProfiles
PS50811
313 379 67 30.01
IPR003657
SMART
SM00774
318 378 61 1.20E-36
IPR003657
Pfam
PF03106
320 377 58 9.70E-27
IPR003657
MobiDBLite
mobidb-lite
490 515 26 – –
MobiDBLite
mobidb-lite
549 572 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj6g3v1825300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1825300.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.