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Lj6g3v1901400.1

Overview

Field	Value
Gene ID	Lj6g3v1901400
Transcript ID	Lj6g3v1901400.1
Related isoforms 2	Lj6g3v1901400.2 Lj6g3v1901400.3
Lotus japonicus genome version	MG20 v3.0
Description	G1121 protein [Medicago truncatula] gi\|357447585\|ref\|XP_003594068.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	76	76	–	–
PANTHER	PTHR12436:SF17 View details on PTHR12436:SF17 Search for proteins/transripts with this domain View external data on PTHR12436:SF17	10	101	92	0	–
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	10	101	92	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	128	150	23	–	–
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	214	1355	1142	0	–
PANTHER	PTHR12436:SF17 View details on PTHR12436:SF17 Search for proteins/transripts with this domain View external data on PTHR12436:SF17	214	1355	1142	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	216	245	30	–	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	274	397	124	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	418	438	21	–	–
Pfam	PF03399 View details on PF03399 Search for proteins/transripts with this domain View external data on PF03399	486	783	298	1.20E-82	IPR005062 Show description in modal box View details on IPR005062 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	847	868	22	–	–
Pfam	PF16769 View details on PF16769 Search for proteins/transripts with this domain View external data on PF16769	1200	1398	199	2.60E-06	IPR031907 Show description in modal box View details on IPR031907 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR12436:SF17 View details on PTHR12436:SF17 Search for proteins/transripts with this domain View external data on PTHR12436:SF17	1382	1625	244	0	–
PANTHER	PTHR12436 View details on PTHR12436 Search for proteins/transripts with this domain View external data on PTHR12436	1382	1625	244	0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1533	1559	27	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 32

Expression data

Expression pattern

Expression pattern of Lj6g3v1901400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1901400.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.