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Lj6g3v1934020.1

Overview

Field Value
Gene ID Lj6g3v1934020
Transcript ID Lj6g3v1934020.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24286
1 319 319 3.60E-197 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 264 264 – –
PANTHER
PTHR24286:SF0
1 319 319 3.60E-197 –
SUPERFAMILY
SSF48264
24 313 290 1.57E-54
IPR001128
Gene3D
G3DSA:1.10.630.10
28 313 286 2.40E-52
IPR001128
Pfam
PF00067
41 285 245 2.60E-39
IPR001128
PRINTS
PR00385
121 138 18 8.10E-07
IPR001128
PRINTS
PR00463
130 156 27 4.20E-14
IPR002401
PRINTS
PR00463
175 193 19 4.20E-14
IPR002401
PRINTS
PR00385
176 187 12 8.10E-07
IPR001128
PRINTS
PR00463
214 238 25 4.20E-14
IPR002401
PRINTS
PR00463
250 260 11 4.20E-14
IPR002401
PRINTS
PR00385
251 260 10 8.10E-07
IPR001128
ProSitePatterns
PS00086
253 262 10 –
IPR017972
PRINTS
PR00463
260 283 24 4.20E-14
IPR002401
PRINTS
PR00385
260 271 12 8.10E-07
IPR001128
Phobius
TRANSMEMBRANE
265 283 19 – –
Phobius
CYTOPLASMIC_DOMAIN
284 328 45 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of
GO:0020037
Molecular function Heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1934020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1934020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.